Genome Assembly workshop

This webpage contains the supporting materials for the Genome Assembly workshop (GG3 Bioinformatics Workshop 1)

Exercise 2

Web interface to visualise and explore de Bruijn graphs built from sequencing reads: de Bruijn graph visualization

(Backup program: Assembly playground)

Exercise 3

Folder with jellyfish output files: jellyfish or download them all in a zip: jellyfish.zip

Webserver to run Genomescope on jellyfish output files: GenomeScope

Exercise 4

Folder with velvet LastGraph files: velvet or download them all in a zip: velvet.zip

Original links on GitHub

• De-Bruijn-Graph-Genome-Visualization by Andri Shostatskyi


• genome_assembly_playground by Andrew Guy


• Jellyfish by Guillaume Marcais


• Bandage by Ryan Wick


• SPAdes from the Center for Algorithmic Biotechnology