Paste some DNA sequences below (with each sequencing"read" on a separate line), and watch as the resulting Eulerian assembly graph is created.
You can drag the graph nodes to rearrange the layout.
Change the k-mer size and note how the structure of the graph changes.
What k-mer sizes result in a more fragmented graph?
What k-mer sizes result in more loops in the graph?
What is the relationship between the k-mer size selected and the node labels?
What do the edges in this graph represent?
What is special about nodes that have more than 1 inwards edge or more than 1 outwards edge?
Paste some DNA sequences below (with each sequencing"read" on a separate line), and watch as the resulting Hamiltonian assembly graph is created.
You can drag the graph nodes to rearrange the layout.
Change the k-mer size and note how the structure of the graph changes.
How does this graph differ from a Eulerian de Bruijn graph
What do the nodes in this graph represent?
What is the relationship between the k-mer size selected and the node labels?
What do the edges in this graph represent?
What is special about nodes that have more than 1 inwards edge or more than 1 outwards edge?