Bioinformatics workshop on extracellular RNA

This webpage contains the practical material for the exRNA PATH COST Bioinformatics workshop.


Practicals:
    Installing R and Bioconductor

  1. Learning to use R

  2. Learning to use R (part 2)

  3. Genome annotation and repeating code

  4. Introduction to Bioconductor with Biostrings

    5. We will now have a brief introduction to working with the Linux command line:

  5. Linux introduction: Using the command line


  6. Linux: Processing raw sequencing fastq files

  7. Linux: Mapping sRNA-Seq sequences with bowtie


  8. Genome annotation and counting reads from BAM alignments

  9. Differential expression analysis for small RNA-Seq

  10. Introduction to ggplot2



Useful links

Tutorials for learning Linux


R & Bioconductor